SNP Profiles matching LCT EEN 193

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	CC	GG	TT	CC	AA	CC	AT	AG	GG	AC	CC	GG
1._LCT_EEN_415	GG	AA	CC	GG	TT	CC	AA	CC	AT	AG	GG	AC	CC	GG
2._LCT_EEN_414	GG	AA	CC	GG	TT	CC	AA	CC	AT	AG	GG	AC	CC	GG
3._RUQ_1554	_	_	CC	GG	TT	CC	AA	CC	AT	_	GG	AC	CC	GG
4._RUQ_1173	_	_	CC	GG	TT	CC	AA	CT	AT	_	GG	CC	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	GG	GG	CT	GG	GG	TT	TT	GG	AT	TT	AA
1._LCT_EEN_415	GG	CC	CC	GG	GG	CT	GG	GG	TT	TT	GG	AT	TT	AA
2._LCT_EEN_414	GG	CC	CC	GG	GG	CT	GG	CG	TT	TT	GG	AT	TT	AA
3._RUQ_1554	CG	CC	CC	_	GT	_	CG	GG	TT	_	_	_	_	AA
4._RUQ_1173	CC	CC	CC	_	GG	_	GG	GG	TT	_	_	_	_	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	TT	AG	AA	CT	TT	GG	CT	CC	TT	TT	CC	AG	CC	X_X
1._LCT_EEN_415	TT	AG	AA	-	TT	GG	CT	CC	TT	TT	CC	AG	-	X_X
2._LCT_EEN_414	TT	AG	AA	-	TT	GG	CT	-	TT	TT	CC	AG	-	X_X
3._RUQ_1554	-	_	_	_	_	GG	_	_	_	TT	CC	AG	_	X_X
4._RUQ_1173	TT	_	_	_	_	GG	_	_	_	TT	CC	AG	_	X_X

Input profile: LCT_EEN_193

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

1._LCT_EEN_415

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

2._LCT_EEN_414

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

3._LCT_EEN_412 RUQ_1554

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._EBC_10_/S-401 RUQ_1173

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1144	33	TcSNP1165	34	TcSNP1253	35	TcSNP1270
36	TcSNP1350	37	TcSNP1414	38	TcSNP1442	39	TcSNP1458	40	TcSNP1484
41	TcSNP1520